Program blastn blastp blastx tblastn tblastx Database A1 CNS merged, TGICL (norm 30x, Oct 2015) 51-3 CNS (norm 30x, Oct 2015) A1 CNS IL100038432+IL100038433 (diginorm) A1 CNS IL100038432+IL100038433 (standard) A1 CNS IL100038709+IL100038708 (DSN/diginorm) A1 CNS IL100038709+IL100038708 (DSN) A1 CNS (all) A2 Salivary IL100038434 (standard) A3 Digestive IL100038435 (standard) A5 Hepatopancreas IL100038436 (standard) A7 Heart IL100038438 (standard) A8 Muscle IL100038439 (standard) A10 Gills IL100038440 (standard) B4 Hermaphroditic IL100038441 (standard) B6 Ovotestis IL100038721 (standard) All of the above combined A1 CNS DSN IL100038709+IL100038708 (genome-guided) Re-oriented cluster seeds CNS + unsheared library CNS cluster seeds
Enter sequence below in FASTA format Or load it from disk
Set subsequence: From To
Expect 0.0001 0.01 1 10 100 1000 Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment
Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Database Genetic Codes (tblast[nx] only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF
Other advanced options:
